PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC241_p8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 266aa    MW: 29261.7 Da    PI: 6.4068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC241_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-11150197455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  RrC241_p8 150 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 197
                8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-18144215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-10144201No hitNo description
Gene3DG3DSA:4.10.280.104.3E-18146214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8150197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDPGGMMNEA GTYNQLAEIW PSYPINGGGT VNSSMRSGVS FGGPNLVHHQ FADSNLISND  60
PARMSHALSQ AVVAGIAGAR KRREAGAEEK FVSVSSDGHD ANDGESKKQR TTGCEDEVET  120
GTLDQKKQLL PEPPKDYIHV RARRGQATDS HSLAERARRE KISERMKILQ DLVPGCNKVI  180
GKALVLDEII NYIQSLQRQV EFLSMKLEAV NSRMTPGIEV FPPKEFDQQT FENPGMQFGS  240
QGTREYSRGA SPEWLHMQVG GGFERS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0863731e-105AY086373.1 Arabidopsis thaliana clone 24644 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640914.11e-179PREDICTED: transcription factor BPE-like
SwissprotQ0JXE77e-94BPE_ARATH; Transcription factor BPE
TrEMBLA0A078DWY71e-179A0A078DWY7_BRANA; BnaA06g06210D protein
STRINGBra019935.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-116BIG PETAL P